Man pages for MyersGroup/MotifFinder
A Bayesian, De Novo, Joint Motif Finder
| cfm | Confusion Matrix |
| download_PWM | Download PWM from Jaspar or Hocomoco |
| export_FASTA | Export character vector to file in FASTA format |
| export_PWM | Export Position-Weight Matrix to file |
| extract_matches | Extract Motif Matches |
| findamotif | Find the single most enriched motif in a set of DNA sequences |
| getmotifs | Jointly call and refine a set of seed motifs provided by the... |
| get_PWM | Calculate Position-Weight Matrix |
| load_sequences | Load DNA sequences from a FASTA file |
| mask_motif | Mask occurrences of motif |
| pcm2pwm | Convert PCM to PWM |
| plot_motif_location | Plot location of motifs in input sequences |
| plot_tomtom_match | Plot Sequence logo denovo motif vs Tomtom match |
| pwm2text | Convert PWM matrix to text (character string) |
| read_meme | Read Meme format Position-Weight Matrix to file |
| simulate_sequences | Simulate DNA sequences with an enriched motif |
| spark_bar | Draw a sparkline bar graph with unicode block characters |
| submotif | Check if a motif is present within another motif |
