load_sequences: Load DNA sequences from a FASTA file
In MyersGroup/MotifFinder: A Bayesian, De Novo, Joint Motif Finder
Description
Usage
Arguments
Value
Description
Load DNA sequences from a FASTA file
Usage
1
load_sequences(file, sm.rm = T, flank = 150, proportion_N = 0.02)
Arguments
file
string; Filename and path of FASTA file of sequences
sm.rm
logical; should soft masked bases (lower case) be converted to N
or capitalised, default=TRUE
flank
integer; how many bases either side of the center should be loaded
proportion_N
numeric; fraction of N bases allowed before the
sequence is removed
Value
charachter vector of DNA sequences
MyersGroup/MotifFinder documentation built on June 7, 2019, 3:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Load DNA sequences from a FASTA file
Usage
1 | load_sequences(file, sm.rm = T, flank = 150, proportion_N = 0.02)
|
Arguments
file |
string; Filename and path of FASTA file of sequences |
sm.rm |
logical; should soft masked bases (lower case) be converted to N or capitalised, default=TRUE |
flank |
integer; how many bases either side of the center should be loaded |
proportion_N |
numeric; fraction of N bases allowed before the sequence is removed |
Value
charachter vector of DNA sequences
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.