plot_tomtom_match: Plot Sequence logo denovo motif vs Tomtom match
In MyersGroup/MotifFinder: A Bayesian, De Novo, Joint Motif Finder
Description
Usage
Arguments
Value
Description
Plot Sequence logo denovo motif vs Tomtom match
Usage
1
2
plot_tomtom_match(query_motif = NULL, tomtom_match = NULL,
titles = NULL, yaxis = TRUE)
Arguments
query_motif
list object output from findamotif()
tomtom_match
data.frame; result from reading in the text output of Tomtom
columns required: "Target.ID", "Orientation", "Optimal.offset"
titles
character vector; titles to use for each logo if not the default
yaxis
logical; If FALSE yaxis values and labels are hidden
Value
A plot, ggplot2 object
MyersGroup/MotifFinder documentation built on June 7, 2019, 3:42 p.m.
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Description Usage Arguments Value
Description
Plot Sequence logo denovo motif vs Tomtom match
Usage
1 2 | plot_tomtom_match(query_motif = NULL, tomtom_match = NULL,
titles = NULL, yaxis = TRUE)
|
Arguments
query_motif |
list object output from findamotif() |
tomtom_match |
data.frame; result from reading in the text output of Tomtom columns required: "Target.ID", "Orientation", "Optimal.offset" |
titles |
character vector; titles to use for each logo if not the default |
yaxis |
logical; If FALSE yaxis values and labels are hidden |
Value
A plot, ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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