Man pages for NCBI-Hackathons/SRA2R
What the package does (short line)

alignReads	Read alignment
alignReadsWithRegion	Read alignment
getBamReadsWithRegion	The reads in the specified region in an SRA record.
getFastqCount	The readCount in the read collection.
getFastqReads	The reads in the read collection.
getFastqReadsWithQuality	The reads in the read collection.
getPileUp	The readCount in the read collection.
getReference	The readCount in the read collection.
getSRAReadsWithRegion	The reads in the specified region in an SRA record.
plotQualityvsDepth.R	Plot quality vs depth for an accession
read1	Example of creating a BStringSet in C++
readCount2	The readCount in the read collection.
reads	The reads in the read collection.
refBases	The readCount in the read collection.
SRA2R	SRA2R: A bridge between the NCBI Sequence Read Archive (SRA)...