Man pages for NCBI-Hackathons/SRA2R
What the package does (short line)

alignReadsRead alignment
alignReadsWithRegionRead alignment
getBamReadsWithRegionThe reads in the specified region in an SRA record.
getFastqCountThe readCount in the read collection.
getFastqReadsThe reads in the read collection.
getFastqReadsWithQualityThe reads in the read collection.
getPileUpThe readCount in the read collection.
getReferenceThe readCount in the read collection.
getSRAReadsWithRegionThe reads in the specified region in an SRA record.
plotQualityvsDepth.RPlot quality vs depth for an accession
read1Example of creating a BStringSet in C++
readCount2The readCount in the read collection.
readsThe reads in the read collection.
refBasesThe readCount in the read collection.
SRA2RSRA2R: A bridge between the NCBI Sequence Read Archive (SRA)...
NCBI-Hackathons/SRA2R documentation built on March 22, 2018, 7:03 a.m.