getPileUp: The readCount in the read collection.
In NCBI-Hackathons/SRA2R: What the package does (short line)
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This simply returns the full read count.
Usage
1
2
Arguments
acc
An accession or a path to an actual SRA file (with .sra suffix)
refname
Reference name for pile up
start
An in for position of start of pileup
stop
An in for position of stop of pileup
MinPileUpDepth
Coverage required
Value
the number of reads in the collection
Author(s)
Nick Bernstein
Examples
1
getPileUp('SRR390728')
NCBI-Hackathons/SRA2R documentation built on May 7, 2019, 5:18 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
This simply returns the full read count.
Usage
1 2 |
Arguments
acc |
An accession or a path to an actual SRA file (with .sra suffix) |
refname |
Reference name for pile up |
start |
An in for position of start of pileup |
stop |
An in for position of stop of pileup |
MinPileUpDepth |
Coverage required |
Value
the number of reads in the collection
Author(s)
Nick Bernstein
Examples
1 | getPileUp('SRR390728')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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