Files in NCBI-Hackathons/SRA2R

What the package does (short line)

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/RcppExports.R R/SRA2R.R R/plotQualityvsDepth.R README.md ReferenceVsDepth.pdf

RunAccessions.txt

SRA2R.Rproj

inst/unitTests/dummyTest.R inst/unitTests/test_getReads.R inst/unitTests/test_getReference.R man/SRA2R.Rd man/alignReads.Rd man/alignReadsWithRegion.Rd man/getBamReadsWithRegion.Rd man/getFastqCount.Rd man/getFastqReads.Rd man/getFastqReadsWithQuality.Rd man/getPileUp.Rd man/getReference.Rd man/getSRAReadsWithRegion.Rd man/plotQualityvsDepth.R.Rd man/read1.Rd man/readCount2.Rd man/reads.Rd man/refBases.Rd

src/.gitignore

src/Biostrings_stubs.c

src/GetReads.cpp

src/IRanges_stubs.c

src/Makevars

src/RcppExports.cpp

src/S4Vectors_stubs.c

src/XVector_stubs.c

src/abc.cpp

src/alignReads.cpp

src/getPileUp.cpp

src/getReferences.cpp

src/refBases.cpp

src/stats.cpp

tests/runFastqTests.Rmd-rpubs.html

tests/runFastqTests.Rmd.Rpres

tests/runTests.R tests/testthat/test_getFastqCount.R tests/testthat/test_getFastqReads.R tests/testthat/test_getPileUp.R tests/testthat/test_getReads.R tests/testthat/test_getReference.R vignettes/Usage-SRA2R.Rmd

vignettes/sra.html

NCBI-Hackathons/SRA2R documentation built on May 7, 2019, 5:18 p.m.