inst/unitTests/test_getReference.R

In NCBI-Hackathons/SRA2R: What the package does (short line)

## Test unit 'testgetReference'

.setUp <-
function () {
	## Specific actions for svUnit: prepare context
	if ("package:svUnit" %in% search()) {
		.Log <- Log() ## Make sure .Log is created
		.Log$..Unit <- "inst/unitTests/runittestGenericGSM.R"
		.Log$..File <- ""
		.Log$..Obj <- ""
		.Log$..Tag <- ""
		.Log$..Msg <- ""
		rm(..Test, envir = .Log)
	}
}

.tearDown <-
function () {
	## Specific actions for svUnit: clean up context
	if ("package:svUnit" %in% search()) {
		.Log$..Unit <- ""
		.Log$..File <- ""
		.Log$..Obj <- ""
		.Log$..Tag <- ""
		.Log$..Msg <- ""
		rm(..Test, envir = .Log)
	}
}


"testgetReference" <-
function() {
    sra = getReference('SRR390728')
    checkEquals(Accession(sra),'SRR390728')
    checkEquals(nrow(Table(sra)),50)
    checkEquals(ncol(Table(sra)),4)
}