alignReadsWithRegion: Read alignment
In NCBI-Hackathons/SRA2R: What the package does (short line)
Description
Usage
Arguments
Value
Examples
Description
This returns the aligned reads.
Usage
1
alignReadsWithRegion(acc, refname, start, stop)
Arguments
acc
An accession or a path to an actual SRA file (with .sra suffix)
start
Start position (inclusive)
stop
End position (inclusive)
ref
The reference name
Value
aligned reads
Examples
1
2
alignReadsWithRegion('SRR789392','NC_000020.10', 62926240, 62958722)
alignReadsWithRegion('SRR789334','NC_000020.10', 62926240, 62958722)
NCBI-Hackathons/SRA2R documentation built on May 7, 2019, 5:18 p.m.
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Description Usage Arguments Value Examples
Description
This returns the aligned reads.
Usage
1 | alignReadsWithRegion(acc, refname, start, stop)
|
Arguments
acc |
An accession or a path to an actual SRA file (with .sra suffix) |
start |
Start position (inclusive) |
stop |
End position (inclusive) |
ref |
The reference name |
Value
aligned reads
Examples
1 2 | alignReadsWithRegion('SRR789392','NC_000020.10', 62926240, 62958722)
alignReadsWithRegion('SRR789334','NC_000020.10', 62926240, 62958722)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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