read1: Example of creating a BStringSet in C++

In NCBI-Hackathons/SRA2R: What the package does (short line)

Description

Example of creating a BStringSet in C++

Usage

read1(classname, acc, lkup)

Arguments

acc	An accession or a path to an actual SRA file (with .sra suffix)
lkup	lkup = get_seqtype_conversion_lookup('B','DNA')
n	The number of reads to return

Value

the reads in the collection

Examples

require(Biostrings)
lkup = get_seqtype_conversion_lookup('B','DNA')
x = SRA2R:::read1('SRR000123',1000,lkup)
x

NCBI-Hackathons/SRA2R documentation built on May 7, 2019, 5:18 p.m.