QC.scatterPlot: QC scatter plots
In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.
View source: R/plot_functions.R
QC.scatterPlot R Documentation
QC scatter plots
Description
Pairwise relationships between 1) UMI count/cell and mitchondrial content, 2) gene count/cell and mitochondrial content, and 3) UMI count/cell and gene count/cell. Cellular density is computed and overlayed as color on scatter plot.
Usage
QC.scatterPlot(so, legend.width = 1, ...)
Arguments
so
Seurat Object
legend.width
numeric specifying legend width (in cm)
...
additional parameters passed to scMiko::getDensity().
Value
ggplot handle
NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.
R Package Documentation
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View source: R/plot_functions.R
| QC.scatterPlot | R Documentation |
QC scatter plots
Description
Pairwise relationships between 1) UMI count/cell and mitchondrial content, 2) gene count/cell and mitochondrial content, and 3) UMI count/cell and gene count/cell. Cellular density is computed and overlayed as color on scatter plot.
Usage
QC.scatterPlot(so, legend.width = 1, ...)
Arguments
so |
Seurat Object |
legend.width |
numeric specifying legend width (in cm) |
... |
additional parameters passed to scMiko::getDensity(). |
Value
ggplot handle
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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