getClusterCenters: Get cluster centers
In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.
View source: R/utility_functions.R
getClusterCenters R Documentation
Get cluster centers
Description
For given dimensional reduction (e.g., UMAP), return cluster center coordinates.
Usage
getClusterCenters(df, which.center = "mean")
Arguments
df
data.frame with columns 'x' and 'y' specifying dimensional reduction coordinates, and column 'cluster' or 'clusters' specifying cluster membership.
which.mean
Specify which central values to use. One of 'mean' or 'median'. Default is 'mean'.
Value
df.centers
Author(s)
Nicholas Mikolajewicz
Examples
# compute cluster centers
which.center <- "mean"
df.red.centers <- get.cluster.centers(df.red, which.center)
NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.
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View source: R/utility_functions.R
| getClusterCenters | R Documentation |
Get cluster centers
Description
For given dimensional reduction (e.g., UMAP), return cluster center coordinates.
Usage
getClusterCenters(df, which.center = "mean")
Arguments
df |
data.frame with columns 'x' and 'y' specifying dimensional reduction coordinates, and column 'cluster' or 'clusters' specifying cluster membership. |
which.mean |
Specify which central values to use. One of 'mean' or 'median'. Default is 'mean'. |
Value
df.centers
Author(s)
Nicholas Mikolajewicz
Examples
# compute cluster centers
which.center <- "mean"
df.red.centers <- get.cluster.centers(df.red, which.center)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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