getExpressingCells: Get cells that express query gene
In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.
View source: R/utility_functions.R
getExpressingCells R Documentation
Get cells that express query gene
Description
Get cells that express query gene above specified threshold
Usage
getExpressingCells(so, query, expression.threshold = 0, which.data = "data")
Arguments
so
Seurat Object
query
Query gene. A character.
expression.threshold
Numeric. Return cells that express query above threshold value. Default is 0.
which.data
Seurat data slot ("data", "scale")
Value
Character vector of cell barcodes/ids
Author(s)
Nicholas Mikolajewicz
NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.
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View source: R/utility_functions.R
| getExpressingCells | R Documentation |
Get cells that express query gene
Description
Get cells that express query gene above specified threshold
Usage
getExpressingCells(so, query, expression.threshold = 0, which.data = "data")
Arguments
so |
Seurat Object |
query |
Query gene. A character. |
expression.threshold |
Numeric. Return cells that express query above threshold value. Default is 0. |
which.data |
Seurat data slot ("data", "scale") |
Value
Character vector of cell barcodes/ids
Author(s)
Nicholas Mikolajewicz
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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