highlightUMAP: Highlight cells on UMAP plot

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Highlight cells on UMAP plot

Description

Highlight cells on UMAP plot

Usage

highlightUMAP(
  object,
  group = "seurat_clusters",
  reduction = "umap",
  highlight.color = "tomato",
  raster = F,
  ...
)

Arguments

object	Seurat object.
group	grouping variable in object's meta data.
reduction	reduction used to visualize cells. Default is "umap".
highlight.color	color of highlighted cells. Default is "tomato".
raster	Convert points to raster format, default is FALSE.

Value

list of ggplot handles

Examples

 plot.highlight <-  highlightUMAP(object = so, group = "seurat_clusters")

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.