id2geneset: Get Reactome/GO geneset
In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.
View source: R/utility_functions.R
id2geneset R Documentation
Get Reactome/GO geneset
Description
Retrieves Reactome/GO geneset using specified annotation ID
Usage
id2geneset(id, my.species)
Arguments
id
Reactome/GO identifier. Reactome has "R-" prefix; GO has "GO" prefix.
my.species
Specify species (one of "Hs" or "Mm"); ensures that correct gene symbols are retrieved.
Value
Character vector of gene symbols belonging to Reactome/GO geneset.
Author(s)
Nicholas Mikolajewicz
NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.
R Package Documentation
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View source: R/utility_functions.R
| id2geneset | R Documentation |
Get Reactome/GO geneset
Description
Retrieves Reactome/GO geneset using specified annotation ID
Usage
id2geneset(id, my.species)
Arguments
id |
Reactome/GO identifier. Reactome has "R-" prefix; GO has "GO" prefix. |
my.species |
Specify species (one of "Hs" or "Mm"); ensures that correct gene symbols are retrieved. |
Value
Character vector of gene symbols belonging to Reactome/GO geneset.
Author(s)
Nicholas Mikolajewicz
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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