inferState: Infer activation state using Gaussian decomposition

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Infer activation state using Gaussian decomposition

Description

Infer activation state using Gaussian decomposition

Usage

inferState(score, group = NULL, diffvar = TRUE, k = 5, min_k = 1, verbose = T)

Arguments

score	activity vector from which activation state will be inferred. Must be continuous data.
group	grouping vector. Default is NULL.
diffvar	specify whether data is heteroscedastic. Default is T.
k	Number of components to evaluate.
min_k	minimum number of components to evaluate. Default is 1.
verbose	Print progress. Default is TRUE.

Value

list of results

See Also

Mclust

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.