loadCellRanger: Load CellRanger preprocessed data

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Load CellRanger preprocessed data

Description

Input data is output from cell ranger (10x datasets)

Usage

loadCellRanger(import_set, input_organisms, dir = "")

Arguments

import_set	Character specifying folder containing matrix.mtx, genes.tsv (or features.tsv) and barcodes.tsv files provided by 10x.
input_organisms	Character specifying species to include. This is necessary to parse ensemble ids into mouse and human. One of: "Hs" - Human "Mm" - Mouse c("Hs", "Mm") - both species included
dir	Character. folder containing import_set folder.

Value

list containing Seurat Object and named gene vector.

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.