miko_heatmap: Function to draw ggplot heatmaps

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Function to draw ggplot heatmaps

Description

Wrapper for pheatmap::pheatmap() and ggplotify::as.ggplot.

Usage

miko_heatmap(
  mat,
  scale = "none",
  symmetric_scale = T,
  scale.lim = NA,
  color = colorRampPalette(rev(brewer.pal(n = 7, name = "RdBu")))(100),
  ...
)

Arguments

mat	numeric matrix
scale	character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
symmetric_scale	Enforce symmetrical color scale. Default is TRUE.
scale.lim	Apply ceiling and floor to all values in matrix. Default is NA.
color	vector of colors used in heatmap
...	additional parameters passed to pheatmap::pheatmap(...)

Author(s)

Nicholas Mikolajewicz

See Also

pheatmap

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.