optimalBinSize: Identify optimal bin size for AddModuleScore() function

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Identify optimal bin size for AddModuleScore() function

Description

Identify optimal bin size for AddModuleScore() function

Usage

optimalBinSize(object, pool = NULL, nbin = 24, seed = 1023, verbose = T)

Arguments

object	Seurat object
pool	List of features to check expression levels against. Defaults to rownames(x = object).
seed	See a random seed. If NULL, seed is not set.
nbinNumber	of bins of aggregate expression levels for all analyzed features. Initial value to begin with looking for optimal bin.

Author(s)

Nicholas Mikolajewicz

Examples

optimal.nbin <-  optimalBinSize(object = so.query)

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.