scExpression.UMAP: Cell-level gene expression projected on UMAP

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Cell-level gene expression projected on UMAP

Description

UMAP plot with cell-level gene expression for queried gene. Uses Seurat::FeaturePlot().

Usage

scExpression.UMAP(
  object,
  query.gene,
  x.label = "UMAP 1",
  y.label = "",
  adjust.pt.size = autoPointSize(ncol(object)),
  order.cells = T,
  plot.name = NULL,
  reduction = "umap",
  ...
)

Arguments

object	Seurat Object
query.gene	Character specifying gene name to plot.
x.label	Character specifying X axis label.
y.label	Character specifying Y axis label.
adjust.pt.size	Adjust point size for plotting. Logical.
order.cells	Plot cells in order of expression. Logical.
plot.name	Character specifying plot title.
reduction	Character specifying reduction name. Default is "umap".
...	additional parameters passed to Seurat::FeaturePlot().

Value

ggplot handle

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.