scoreGBM: Annotate glioblastoma (GBM) subtype based on Neftel 2019...

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline.

Description

Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline.

Usage

scoreGBM(
  object,
  species = detectSpecies(object),
  verbose = T,
  do.snip = T,
  reduction = "umap"
)

Arguments

object	seurat object
species	Species, either "Mm" or "Hs".
verbose	Print progress. Default is TRUE.
do.snip	truncate scores at 1st and 99th percentiles (protects against outliers). Default is T.
reduction	reduction slot to project scores onto. Default is "umap"

Author(s)

Nicholas Mikolajewicz

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.