scoreGBM: Annotate glioblastoma (GBM) subtype based on Neftel 2019...

View source: R/utility_functions.R

scoreGBMR Documentation

Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline.

Description

Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline.

Usage

scoreGBM(
  object,
  species = detectSpecies(object),
  verbose = T,
  do.snip = T,
  reduction = "umap"
)

Arguments

object

seurat object

species

Species, either "Mm" or "Hs".

verbose

Print progress. Default is TRUE.

do.snip

truncate scores at 1st and 99th percentiles (protects against outliers). Default is T.

reduction

reduction slot to project scores onto. Default is "umap"

Author(s)

Nicholas Mikolajewicz


NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.