View source: R/utility_functions.R
scoreGBM | R Documentation |
Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline.
scoreGBM(
object,
species = detectSpecies(object),
verbose = T,
do.snip = T,
reduction = "umap"
)
object |
seurat object |
species |
Species, either "Mm" or "Hs". |
verbose |
Print progress. Default is TRUE. |
do.snip |
truncate scores at 1st and 99th percentiles (protects against outliers). Default is T. |
reduction |
reduction slot to project scores onto. Default is "umap" |
Nicholas Mikolajewicz
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