searchAnnotations: Search Reactome/GO databases for terms that match query

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Search Reactome/GO databases for terms that match query

Description

Searches Reactome/GO databases using query stem (i.e., incomplete term) and returns all matches.

Usage

searchAnnotations(query, db = NULL, species = NULL, ontology = NULL)

Arguments

query	Query term. A character.
db	Database to search, if specified. One of: "Reactome" "GO"
species	Character specifying species, if specified. One of: "Hs" "Mm"
ontology	Character specifying GO ontology to filter terms by. If unspecified, one or more of: "BP" - biological processes "MF" - molecular functions "CC" - cellular compartment

Value

dataframe of terms that match query

Author(s)

Nicholas Mikolajewicz

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.