setResolution: Set cluster resolution

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Set cluster resolution

Description

Set 'Seurat_Clusters' metadata entry to specified cluster resolution [0, inf]. Wrapper for Seurat's FindClusters() function.

Usage

setResolution(
  object,
  resolution,
  assay = DefaultAssay(object),
  use.existing.clusters = T,
  ...
)

Arguments

object	Seurat Object
resolution	Numeric [0, inf] specifying cluster resolution. Values [0.1,1] typically perform well.
assay	Seurat assay to check for existing clustering at specified resolution.
use.existing.clusters	Logical flag specifying whether to use existing clustering solution if it already exists for specified resolution.
...	additional arguments passed to Seurat::FindClusters(...)

Value

Seurat object

Author(s)

Nicholas Mikolajewicz

See Also

FindClusters

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.