sim2adj: Compute adjaceny matrix from similary (correlation) matrix

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Compute adjaceny matrix from similary (correlation) matrix

Description

Compute adjaceny matrix from similary (correlation) matrix for different network types.

Usage

sim2adj(s.mat, soft.power, network.type)

Arguments

s.mat	Similarity matrix. Symmetric matrix with rows and columns corresponding to genes, and diagonal = 1.
soft.power	Numeric specifying soft power used to calculate adjacency matrix.
network.type	character specifying network type. Must be one of "unsigned", "signed", or "signed hybrid".

Value

adjaceny matrix (a.mat)

Author(s)

Nicholas Mikolajewicz

Examples

# Convert similary to adjacency
a.mat <- sim2adj(s.mat, soft.power = 2, network.type = "signed")

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.