sym2ens: Convert gene symbol to ensembl

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Convert gene symbol to ensembl

Description

Gene symbol is converted to ensembl id using org.Hs.eg.db or org.Mm.eg.db annotation databases.

Gene ensemble id is converted to symbol using org.Hs.eg.db or org.Mm.eg.db annotation databases.

Usage

sym2ens(my.symbols, my.species)

ensembl2sym(my.ensembl, my.species)

Arguments

my.symbols	Character. Vector of Gene symbols.
my.species	Character. Species, one of "Mm" or "Hs".
my.ensembl	Character. Vector of ENSEMBL ids.

Value

data.frame mapping gene Symbols to Ensembl

data.frame mapping gene Ensemble to Symbol

Author(s)

Nicholas Mikolajewicz

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.