term2id: Map Reactome/GO term to ID

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Map Reactome/GO term to ID

Description

Map Reactome/GO term to ID

Usage

term2id(term, db = "Reactome", species = NULL)

Arguments

term	Reactome/GO term
db	Database to use for mapping. One of: "Reactome" - Default "GO"
species	Character specifying species. If specified, one of: "Hs" "Mm"

Value

Reactome/GO ID

Author(s)

Nicholas Mikolajewicz

Examples

# map GO term to GO id
id <- term2id(term, db = "GO", species = "Hs")

# get geneset for specified GO id (returns character of genes)
gene.set <- id2geneset(id, "Hs")

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.