updateGeneSets: Create/update list of gene sets for scMiko package.

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Create/update list of gene sets for scMiko package.

Description

Takes genesets stored in Excel sheets, and converts them to dataframes stored in lists.

Usage

updateGeneSets(input.file, output.file, dir = "", dev.directory.flag = F)

Arguments

input.file	Excel file (input). Must have ".xlsx" suffix. A character.
output.file	Rdata file (output). Must have ".rda" suffix. A character.
dir	Directory of input and output file (same folder). A character.
dev.directory.flag	Logical indicating whether to use developer specific director. Default is False. If true dir is ignored.

Value

List of data.frames saved as Rdata file.

Author(s)

Nicholas Mikolajewicz

Examples

## Not run: 
updateGeneSets("geneSets_MASTER_080622update.xlsx", "geneSets.rda", dev.directory.flag = T)

## End(Not run)

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.