variableGenes.Plot: Plot variable genes in Seurat Object

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Plot variable genes in Seurat Object

Description

Using Seurat's VariableFeaturePlot, variable genes are identified and plotted. Top N variable genes are labeled.

Usage

variableGenes.Plot(
  so,
  gNames,
  set_name = NULL,
  top.n.genes = 10,
  pt.colors = c("black", "tomato"),
  ...
)

Arguments

so	Seurat Object
gNames	Named gene list; entries are Symbols, names are Ensemble.
set_name	Character specfiying name of dataset. Optional.
top.n.genes	Numeric. Top n genes to label on plot.
pt.colors	colors to specify non-variable/variable status.
...	additional arguments passed to Seurat::VariableFeaturePlot(...)

Value

ggplot handle

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.