wnn_Components: Compute network component UMAPs and visualize component...

In NMikolajewicz/scMiko: scRNAseq analysis functions. Developed using Seurat framework.

Compute network component UMAPs and visualize component weights.

Description

Compute network component UMAPs and visualize component weights.

Usage

wnn_Components(
  object,
  exp.list,
  dim.lists,
  plt.wnn.umap,
  umap.min.dist = 0.1,
  umap.n.neighbors = 20
)

Arguments

object	wnn integrated seurat object (wnn_Run output)
exp.list	List of expression matrices (wnn_Run list input)
dim.lists	List of PC numbers (wnn_Run output)
plt.wnn.umap	ggplot handle for integrated network umap (wnn_Run output)
umap.min.dist	min.dist for umap embedding. See RunUMAP(). Default: 0.1
umap.n.neighbors	n.neighbor for umap embedding. See RunUMAP(). Default: 20

Value

list of ggplot handle and object

Author(s)

Nicholas Mikolajewicz

NMikolajewicz/scMiko documentation built on June 28, 2023, 1:41 p.m.