Files in Nanostring-Biostats/GeoDiff
Count model based differential expression and normalization on GeoMx RNA data
.Rbuildignore
.github/workflows/main.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/NBth.R
R/NBthDE.R
R/NBthDE_nllopt.R
R/NBth_nllopt.R
R/NBthmDE.R
R/NBthmDE_feat.R
R/NBthmDE_rcovnll.R
R/PoisBG.R
R/PoisthNorm.R
R/PoisthNorm_nllopt.R
R/RcppExports.R
R/ScoreTest.R
R/aggreprobe.R
R/data.R
README.md
data/NBthDEmod2.rda
data/NBthmDEmod2.rda
data/NBthmDEmod2slope.rda
data/demoData.rda
data/kidney.rda
man/BGScoreTest-methods.Rd
man/BGScoreTest_sp-methods.Rd
man/DENBth-methods.Rd
man/NBthDEmod2.Rd
man/NBthmDEmod2.Rd
man/NBthmDEmod2slope.Rd
man/QuanRange-methods.Rd
man/aggreprobe-methods.Rd
man/coefNBth-methods.Rd
man/contrastNBth-methods.Rd
man/demoData.Rd
man/diagPoisBG-methods.Rd
man/fitNBth-methods.Rd
man/fitNBthDE-methods.Rd
man/fitNBthmDE-methods.Rd
man/fitPoisBG-methods.Rd
man/fitPoisBG_sp-methods.Rd
man/fitPoisthNorm-methods.Rd
man/fitPoisthNorm_sp-methods.Rd
man/kidney.Rd
reqs.md
specs.md
src-i386/GeoDiff.h
src-i386/Makevars
src-i386/Makevars.win
src-i386/NBthDEOptPara.cpp
src-i386/NBthmDEGrad.cpp
src-i386/NBthmDEMH.cpp
src-i386/NBthmDEOptPara.cpp
src-i386/NBthmDEOptU.cpp
src-i386/PoisthNormOptPara.cpp
src-i386/RcppExports.cpp
src-i386/dnbinom_mu_vec.cpp
src/GeoDiff.h
src/Makevars
src/Makevars.win
src/NBthDEOptPara.cpp
src/NBthmDEGrad.cpp
src/NBthmDEMH.cpp
src/NBthmDEOptPara.cpp
src/NBthmDEOptU.cpp
src/PoisthNormOptPara.cpp
src/RcppExports.cpp
src/dnbinom_mu_vec.cpp
tests/testthat.R
tests/testthat/test-DENBth.R
tests/testthat/test-QuanRange.R
tests/testthat/test-aggreprobe.R
tests/testthat/test-coefNBth.R
tests/testthat/test-contrastNBth.R
tests/testthat/test-diagPoisBG.R
tests/testthat/test-fitNBth.R
tests/testthat/test-fitNBthDE.R
tests/testthat/test-fitNBthmDE.R
tests/testthat/test-fitPoisBG.R
tests/testthat/test-fitPoisthNorm.R
tests/testthat/test-scoretest.R
vignettes/.gitignore
vignettes/Workflow_WTA_kidney.Rmd
