Man pages for Nanostring-Biostats/NanoStringExperiment
Base NanoString Experiment Class
| annotation | Access experiment annotations |
| as.list-NanoStringExperiment-method | Coerce NanoStringExperiment object to list |
| assayData | Access assays |
| assayDataApply | Apply across an assay |
| classVersion | Object class version accessor |
| controlSubset | Subset to control features |
| controlSubset-NanoStringExperiment-method | Subset to IsControl features |
| design | Access design formula |
| dimLabels | Access variables used for feature and sample identifiers |
| endogenousSubset | Subset to endogenous features |
| endogenousSubset-NanoStringExperiment-method | Subset to endogenous features |
| esApply | Apply across default exprs assay |
| esBy | Apply across NanoStringExperiment object by groupings |
| experimentMetadata | Access experiment metadata |
| featureMetadata | Access feature metadata |
| featureNames | Access feature identifiers |
| housekeepingSubset | Subset to housekeeping features |
| housekeepingSubset-NanoStringExperiment-method | Subset to housekeeping features |
| munge | Append metadata to assay in long format |
| munge-NanoStringExperiment-method | Append metadata to assay in long format |
| NanoStringExperiment-class | The NanoStringExperiment class |
| negativeControlSubset | Subset to negative control features |
| negativeControlSubset-NanoStringExperiment-method | Subset to negative control features |
| nonControlSubset | Subset to non-IsControl features |
| nonControlSubset-NanoStringExperiment-method | Subset to non-IsControl features |
| normalize | Normalize an assay |
| positiveControlSubset | Subset to positive control features |
| positiveControlSubset-NanoStringExperiment-method | Subset to positive control features |
| sampleMetadata | Access sample metadata |
| sampleNames | Access sample identifiers |
| setQCFlags | Set quality control flags |
| signatures | Access signatures slot |
| signatures-NanoStringExperiment-method | Access signatures slot |
| signatureSubset | Subset to signature features |
| signatureSubset-NanoStringExperiment-method | Subset to signature features |
| summary-NanoStringExperiment-method | Summarize assay data |
| testAnnotation | NanoString annotations |
| testAssayData | NanoString expression data |
| testDimLabels | NanoString dimension labels |
| testExp | Example NanoStringExperiment object |
| testExperimentData | NanoString experiment data |
| testFeatureData | NanoString feature metadata |
| testPhenoData | NanoString sample phenotypic metadata |
| testProtocolData | NanoString sample protocol metadata |
| with-NanoStringExperiment-method | Evaluate expression on NanoStringExperiment list |
