munge-NanoStringExperiment-method: Append metadata to assay in long format

In Nanostring-Biostats/NanoStringExperiment: Base NanoString Experiment Class

Append metadata to assay in long format

Description

Convert assay DataFrame into long format and append labels and meta to the new DataFrame

Usage

## S4 method for signature 'NanoStringExperiment'
munge(
  data,
  mapping = update(design(data), exprs ~ .),
  extradata = NULL,
  elt = "exprs",
  ...
)

Arguments

data	NanoStringExperiment object
mapping	formula to map data by
extradata	additional data to append
elt	expression matrix for assay element "exprs"
...	additional parameters

Value

matrix of results in long format

Examples

data(exampleNSEData)
head(munge(testExp, mapping = ~`cell_line` + exprs))

Nanostring-Biostats/NanoStringExperiment documentation built on April 28, 2022, 6:24 a.m.