esBy: Apply across NanoStringExperiment object by groupings

In Nanostring-Biostats/NanoStringExperiment: Base NanoString Experiment Class

Apply across NanoStringExperiment object by groupings

Description

Group samples or features by variable and apply a function

Group samples or features by variable and apply a function

Usage

esBy(X, GROUP, FUN, ...)

## S4 method for signature 'NanoStringExperiment'
esBy(X, GROUP, FUN, ..., simplify = TRUE)

Arguments

X	NanoStringExperiment object
GROUP	colData header to group by
FUN	function to apply
...	parameters to pass to FUN
simplify	boolean indicating whether to simplify output

Value

list or matrix of results

list or matrix of results

Examples

data(exampleNSEData)
esBy(testExp, 
    GROUP = "cell_line", 
    FUN = function(x) { 
        assayDataApply(x, MARGIN = 1, FUN = mean, elt = "exprs") 
    })

data(exampleNSEData)
esBy(testExp, 
    GROUP = "cell_line", 
    FUN = function(x) { 
        assayDataApply(x, MARGIN = 1, FUN = mean, elt = "exprs") 
    })

Nanostring-Biostats/NanoStringExperiment documentation built on April 28, 2022, 6:24 a.m.