summary-NanoStringExperiment-method: Summarize assay data

In Nanostring-Biostats/NanoStringExperiment: Base NanoString Experiment Class

Summarize assay data

Description

Get chosen summary statistics for a selected assay

Usage

## S4 method for signature 'NanoStringExperiment'
summary(
  object,
  MARGIN = 2L,
  GROUP = NULL,
  log2scale = TRUE,
  elt = "exprs",
  signatureScores = FALSE,
  ...
)

Arguments

object	NanoStringExperiment object
MARGIN	integer to apply across row or column
GROUP	colData header to group by
log2scale	boolean indicating to use log2 values
elt	assay data matrix name
signatureScores	boolean to use signature scores
...	parameters to pass to summary

Value

summary table of aggregated results

Examples

data(exampleNSEData)
summary(testExp)

Nanostring-Biostats/NanoStringExperiment documentation built on April 28, 2022, 6:24 a.m.