assayData: Access assays
In Nanostring-Biostats/NanoStringExperiment: Base NanoString Experiment Class

assayData,NanoStringExperiment-method

R Documentation

Access assays

Description

It is recommended to use the SummarizedExperiment assays instead. This is a convenience method for backwards compatibility.

It is recommended to use the SummarizedExperiment assayNames instead. This is a convenience method for backwards compatibility.

It is recommended to use the SummarizedExperiment assays instead. This is a convenience method for backwards compatibility.

Usage

## S4 method for signature 'NanoStringExperiment'
assayData(object)

assayDataElement(object, elt)

## S4 method for signature 'NanoStringExperiment'
assayDataElement(object, elt)

assayDataElement(object, elt, ...) <- value

## S4 replacement method for signature 'NanoStringExperiment'
assayDataElement(object, elt, ...) <- value

assayDataElementNames(object)

## S4 method for signature 'NanoStringExperiment'
assayDataElementNames(object)

## S4 method for signature 'NanoStringExperiment'
exprs(object)

## S4 replacement method for signature 'NanoStringExperiment,ANY'
exprs(object) <- value

Arguments

`object`	NanoStringExperiment object
`elt`	name of assay
`...`	additional parameters to pass to assayDataElement
`value`	expression matrix

Value

summary of assays in object

expression matrix for assay element

NanoStringExperiment object

list of assay elements in object

expression matrix for assay element "exprs"

Examples

data(exampleNSEData)
assayData(testExp)

data(exampleNSEData)
assayDataElement(testExp, "exprs")

data(exampleNSEData)
assayDataElement(testExp, "exprs")

data(exampleNSEData)
assayDataElement(testExp, "exprsShift") <- 
    assayDataElement(testExp, "exprs") + 1

data(exampleNSEData)
assayDataElement(testExp, "exprsShift") <- 
    assayDataElement(testExp, "exprs") + 1

data(exampleNSEData)
assayDataElementNames(testExp)

data(exampleNSEData)
assayDataElementNames(testExp)

data(exampleNSEData)
exprs(testExp)

data(exampleNSEData)
exprs(testExp) <- exprs(testExp) + 1

Nanostring-Biostats/NanoStringExperiment documentation built on April 28, 2022, 6:24 a.m.