get_annotation_contrast: Subset and annotate a DESeqDataSet for contrast-specific...
In NicWir/VisomX: User-Friendly and Comprehensive Analysis and Visualization of Omics Data
get_annotation_contrast R Documentation
Subset and annotate a DESeqDataSet for contrast-specific heatmaps
Description
Subset and annotate a DESeqDataSet for contrast-specific heatmaps
Usage
get_annotation_contrast(dds, indicate, contrast = contrast_samples)
Arguments
dds
A DESeqDataSet or SummarizedExperiment.
indicate
Character vector of column names in colData(dds) to use for annotation.
contrast
Character vector of condition patterns to retain in the annotation.
Value
A ComplexHeatmap::HeatmapAnnotation object.
NicWir/VisomX documentation built on July 17, 2025, 12:08 a.m.
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| get_annotation_contrast | R Documentation |
Subset and annotate a DESeqDataSet for contrast-specific heatmaps
Description
Subset and annotate a DESeqDataSet for contrast-specific heatmaps
Usage
get_annotation_contrast(dds, indicate, contrast = contrast_samples)
Arguments
dds |
A |
indicate |
Character vector of column names in |
contrast |
Character vector of condition patterns to retain in the annotation. |
Value
A ComplexHeatmap::HeatmapAnnotation object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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