met.GetFC: Used by higher functions to calculate fold change

In NicWir/VisomX: User-Friendly and Comprehensive Analysis and Visualization of Omics Data

Used by higher functions to calculate fold change

Description

Utility method to calculate FC, used in higher function

Usage

met.GetFC(mSetObj = NA, paired = FALSE, grp1, grp2)

Arguments

mSetObj	Enter the name of the created mSet object. (see met.read_data)
paired	(Logical) Are the data in both groups paired (TRUE) or not (FALSE).
grp1	(Character) Enter name of the first group for the contrast grp1 vs. grp2. If both group arguments are empty, the first two names in the list of groups are selected.
grp2	(Character) Enter name of the second group for the contrast grp1 vs. grp2. If both group arguments are empty, the first two names in the list of groups are selected.

Value

The input mSet object with results of fold-change analysis added at mSetObj$analSet$fc$grp1_vs_grp2.

Author(s)

Nicolas T. Wirth [e-mail] Technical University of Denmark License: GNU GPL (>= 2)

References

adapted from GetFC (https://github.com/xia-lab/MetaboAnalystR).

NicWir/VisomX documentation built on Dec. 8, 2024, 1:27 a.m.