met.ANOVA.Anal: Perform ANOVA analysis
In NicWir/VisomX: User-Friendly and Comprehensive Analysis and Visualization of Omics Data
met.ANOVA.Anal R Documentation
Perform ANOVA analysis
Description
ANOVA analysis
Usage
met.ANOVA.Anal(
mSetObj = NA,
nonpar = FALSE,
thresh = 0.05,
post.hoc = "fisher",
all_results = FALSE,
silent = FALSE
)
Arguments
mSetObj
Enter the name of the created mSet object. (see met.read_data)
nonpar
(Logical) Use a non-parametric test (TRUE) or not (FALSE).
thresh
(Numeric) From 0 to 1, indicate the p-value threshold.
post.hoc
(Character) Enter the name of the post-hoc test, "fisher" or "tukey".
all_results
(Logical) If TRUE, it the ANOVA results for all compounds with no post-hoc tests performed will be written as CSV file "anova_all_results.csv".
silent
(Logical) Suppress message with number of significant features found (TRUE) or not (FALSE).
Value
The input mSet object with ANOVA results added at mSetObj$analSet$aov.
Author(s)
Nicolas T. Wirth mail.nicowirth@gmail.com
Technical University of Denmark
License: GNU GPL (>= 2)
References
adapted from ANOVA.Anal (https://github.com/xia-lab/MetaboAnalystR).
NicWir/VisomX documentation built on Dec. 8, 2024, 1:27 a.m.
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| met.ANOVA.Anal | R Documentation |
Perform ANOVA analysis
Description
ANOVA analysis
Usage
met.ANOVA.Anal(
mSetObj = NA,
nonpar = FALSE,
thresh = 0.05,
post.hoc = "fisher",
all_results = FALSE,
silent = FALSE
)
Arguments
mSetObj |
Enter the name of the created mSet object. (see |
nonpar |
(Logical) Use a non-parametric test ( |
thresh |
(Numeric) From 0 to 1, indicate the p-value threshold. |
post.hoc |
(Character) Enter the name of the post-hoc test, |
all_results |
(Logical) If |
silent |
(Logical) Suppress message with number of significant features found ( |
Value
The input mSet object with ANOVA results added at mSetObj$analSet$aov.
Author(s)
Nicolas T. Wirth mail.nicowirth@gmail.com Technical University of Denmark License: GNU GPL (>= 2)
References
adapted from ANOVA.Anal (https://github.com/xia-lab/MetaboAnalystR).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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