met.plot_CorrHeatMap_Samples | R Documentation |
met.plot_CorrHeatMap_Samples
visualizes the correlations between samples.
met.plot_CorrHeatMap_Samples(
mSetObj = NA,
imgName = "correlation_samples",
format = "pdf",
dpi = 72,
width = NA,
cor.method = "pearson",
colors = "bwm",
viewOpt = "overview",
fix.col = FALSE,
no.clst = FALSE,
corrCutoff = 0,
plot = TRUE,
export = TRUE
)
mSetObj |
Input name of the created mSet object. |
imgName |
(Character) Enter a name for the image file (if |
format |
(Character, |
dpi |
(Numeric) resolution of the image file (if |
width |
(Numeric) width of the the image file in inches (if |
cor.method |
(Character) Indicate the correlation method, |
colors |
(Character) Indicate the colors for the heatmap, |
viewOpt |
(Character) Indicate |
fix.col |
(Logical) Fix colors ( |
no.clst |
(Logical) Indicate if the correlations should be clustered ( |
corrCutoff |
(Numeric) Set correlation cut off. |
plot |
(Logical, |
export |
(Logical, |
The input mSet object with added heat map showing the correlations between samples. The plot can be retrieved from within R via print(mSetObj$imgSet$corr.heatmap_samples.plot)
.
Nicolas T. Wirth mail.nicowirth@gmail.com Technical University of Denmark License: GNU GPL (>= 2)
adapted from PlotCorrHeatMap
(https://github.com/xia-lab/MetaboAnalystR).
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