R/ExperimentsApi.r

In OpenSILEX/opensilexClientToolsR: R Package Client for OpenSilex API

# OpenSilex API
#
# No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen)
#
# OpenAPI spec version: 1.0.0-rc+2
# 
# Generated by: https://github.com/swagger-api/swagger-codegen.git

#' @title Experiments operations
#' @description opensilexClientToolsR.Experiments
#'
#' @field path Stores url path of the request.
#' @field apiClient Handles the client-server communication.
#' @field userAgent Set the user agent of the request.
#'
#' @importFrom R6 R6Class
#'
#' @section Methods:
#' \describe{
#'
#' create_experiment Add an experiment
#'
#'
#' delete_experiment Delete an experiment
#'
#'
#' export_experiment_data_list export experiment data
#'
#'
#' get_available_facilities Get facilities available for an experiment
#'
#'
#' get_available_factors Get factors with their levels associated to an experiment
#'
#'
#' get_available_species Get species present in an experiment
#'
#'
#' get_experiment Get an experiment
#'
#'
#' get_experiments_by_ur_is Get experiments URIs
#'
#'
#' get_used_variables1 Get variables involved in an experiment
#'
#'
#' import_csv_data1 Import a CSV file for the given experiment URI and scientific object type.
#'
#'
#' search_experiment_data_list Search data
#'
#'
#' search_experiment_provenances Get provenances involved in an experiment
#'
#'
#' search_experiments Search experiments
#'
#'
#' update_experiment Update an experiment
#'
#'
#' validate_csv1 Import a CSV file for the given experiment URI and scientific object type.
#'
#' }
#'
#' @export
ExperimentsApi <- R6::R6Class(
  'ExperimentsApi',
  public = list(
    userAgent = "Swagger-Codegen/1.0.0/r",
    apiClient = NULL,
    initialize = function(apiClient){
      if (!missing(apiClient)) {
        self$apiClient <- apiClient
      }
      else {
        self$apiClient <- ApiClient$new()
      }
    },
    create_experiment = function(body,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`body`)) {
        if(is.list(`body`)){
          bodyList <- lapply(`body`, function(x){x$toJSONString()})
          bodyListPaste <- paste(bodyList, collapse=', ' )
          body <- paste('[',bodyListPaste,']')
        }else{
          body <- paste(`body`$toJSONString())
        }
      } else {
        body <- NULL
      }
     
      urlPath <- "/core/experiments"
      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "POST",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "POST"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ObjectUriResponse$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    delete_experiment = function(uri,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      urlPath <- "/core/experiments/{uri}"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "DELETE",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "DELETE"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ObjectUriResponse$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    export_experiment_data_list = function(uri,start_date,end_date,timezone,scientific_objects,variables,min_confidence,max_confidence,provenance,metadata,mode,order_by,page,page_size,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`start_date`)) {
        queryParams['start_date'] <- start_date
      }

      if (!missing(`end_date`)) {
        queryParams['end_date'] <- end_date
      }

      if (!missing(`timezone`)) {
        queryParams['timezone'] <- timezone
      }

      if (!missing(`scientific_objects`)) {
        queryParams['scientific_objects'] <- scientific_objects
      }

      if (!missing(`variables`)) {
        queryParams['variables'] <- variables
      }

      if (!missing(`min_confidence`)) {
        queryParams['min_confidence'] <- min_confidence
      }

      if (!missing(`max_confidence`)) {
        queryParams['max_confidence'] <- max_confidence
      }

      if (!missing(`provenance`)) {
        queryParams['provenance'] <- provenance
      }

      if (!missing(`metadata`)) {
        queryParams['metadata'] <- metadata
      }

      if (!missing(`mode`)) {
        queryParams['mode'] <- mode
      }

      if (!missing(`order_by`)) {
        queryParams['order_by'] <- order_by
      }

      if (!missing(`page`)) {
        queryParams['page'] <- page
      }

      if (!missing(`page_size`)) {
        queryParams['page_size'] <- page_size
      }

      urlPath <- "/core/experiments/{uri}/data/export"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
        # void response, no need to return anything
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    get_available_facilities = function(uri,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      urlPath <- "/core/experiments/{uri}/available_facilities"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- InfrastructureFacilityGetDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    get_available_factors = function(uri,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      urlPath <- "/core/experiments/{uri}/factors"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- FactorDetailsGetDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    get_available_species = function(uri,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      urlPath <- "/core/experiments/{uri}/species"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- SpeciesDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    get_experiment = function(uri,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      urlPath <- "/core/experiments/{uri}"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ExperimentGetDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    get_experiments_by_ur_is = function(uris,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`uris`)) {
        queryParams['uris'] <- uris
      }

      urlPath <- "/core/experiments/by_uris"
      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ExperimentGetListDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    get_used_variables1 = function(uri,scientific_objects,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`scientific_objects`)) {
        queryParams['scientific_objects'] <- scientific_objects
      }

      urlPath <- "/core/experiments/{uri}/variables"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- NamedResourceDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    import_csv_data1 = function(uri,provenance,file,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`provenance`)) {
        queryParams['provenance'] <- provenance
      }

      body <- list(
          "file" = httr::upload_file(file)
      )

      urlPath <- "/core/experiments/{uri}/data/import"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "POST",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "POST"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- DataCSVValidationDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    search_experiment_data_list = function(uri,start_date,end_date,timezone,scientific_objects,variables,min_confidence,max_confidence,provenances,metadata,order_by,page,page_size,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`start_date`)) {
        queryParams['start_date'] <- start_date
      }

      if (!missing(`end_date`)) {
        queryParams['end_date'] <- end_date
      }

      if (!missing(`timezone`)) {
        queryParams['timezone'] <- timezone
      }

      if (!missing(`scientific_objects`)) {
        queryParams['scientific_objects'] <- scientific_objects
      }

      if (!missing(`variables`)) {
        queryParams['variables'] <- variables
      }

      if (!missing(`min_confidence`)) {
        queryParams['min_confidence'] <- min_confidence
      }

      if (!missing(`max_confidence`)) {
        queryParams['max_confidence'] <- max_confidence
      }

      if (!missing(`provenances`)) {
        queryParams['provenances'] <- provenances
      }

      if (!missing(`metadata`)) {
        queryParams['metadata'] <- metadata
      }

      if (!missing(`order_by`)) {
        queryParams['order_by'] <- order_by
      }

      if (!missing(`page`)) {
        queryParams['page'] <- page
      }

      if (!missing(`page_size`)) {
        queryParams['page_size'] <- page_size
      }

      urlPath <- "/core/experiments/{uri}/data"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- DataGetDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    search_experiment_provenances = function(uri,name,description,activity,activity_type,agent,agent_type,order_by,page,page_size,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`name`)) {
        queryParams['name'] <- name
      }

      if (!missing(`description`)) {
        queryParams['description'] <- description
      }

      if (!missing(`activity`)) {
        queryParams['activity'] <- activity
      }

      if (!missing(`activity_type`)) {
        queryParams['activity_type'] <- activity_type
      }

      if (!missing(`agent`)) {
        queryParams['agent'] <- agent
      }

      if (!missing(`agent_type`)) {
        queryParams['agent_type'] <- agent_type
      }

      if (!missing(`order_by`)) {
        queryParams['order_by'] <- order_by
      }

      if (!missing(`page`)) {
        queryParams['page'] <- page
      }

      if (!missing(`page_size`)) {
        queryParams['page_size'] <- page_size
      }

      urlPath <- "/core/experiments/{uri}/provenances"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ProvenanceGetDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    search_experiments = function(name,year,is_ended,species,factors,projects,is_public,order_by,page,page_size,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`name`)) {
        queryParams['name'] <- name
      }

      if (!missing(`year`)) {
        queryParams['year'] <- year
      }

      if (!missing(`is_ended`)) {
        queryParams['is_ended'] <- is_ended
      }

      if (!missing(`species`)) {
        queryParams['species'] <- species
      }

      if (!missing(`factors`)) {
        queryParams['factors'] <- factors
      }

      if (!missing(`projects`)) {
        queryParams['projects'] <- projects
      }

      if (!missing(`is_public`)) {
        queryParams['is_public'] <- is_public
      }

      if (!missing(`order_by`)) {
        queryParams['order_by'] <- order_by
      }

      if (!missing(`page`)) {
        queryParams['page'] <- page
      }

      if (!missing(`page_size`)) {
        queryParams['page_size'] <- page_size
      }

      urlPath <- "/core/experiments"
      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "GET",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "GET"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ExperimentGetListDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    update_experiment = function(body,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`body`)) {
        if(is.list(`body`)){
          bodyList <- lapply(`body`, function(x){x$toJSONString()})
          bodyListPaste <- paste(bodyList, collapse=', ' )
          body <- paste('[',bodyListPaste,']')
        }else{
          body <- paste(`body`$toJSONString())
        }
      } else {
        body <- NULL
      }
     
      urlPath <- "/core/experiments"
      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "PUT",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "PUT"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- ObjectUriResponse$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    },
    validate_csv1 = function(uri,provenance,file,...){
      args <- list(...)
      queryParams <- list()
      headerParams <- character()
      self$apiClient$basePath =  sub("/$", "",get("BASE_PATH",opensilexWSClientR:::configWS))
      if(self$apiClient$basePath == ""){
        stop("Wrong you must first connect with connectToOpenSILEX")
      }
      
      #if (!missing(`authorization`)) {
      #  headerParams['Authorization'] <- authorization
      #}
      #if (!missing(`accept_language`)) {
      #  headerParams['Accept-Language'] <- accept_language
      #}

      if (!missing(`provenance`)) {
        queryParams['provenance'] <- provenance
      }

      body <- list(
          "file" = httr::upload_file(file)
      )

      urlPath <- "/core/experiments/{uri}/data/import_validation"
      if (!missing(`uri`)) {
        urlPath <- gsub(paste0("\\{", "uri", "\\}"), `uri`, urlPath)
      }

      resp <- self$apiClient$callApi(url = paste0(self$apiClient$basePath, urlPath),
                                 method = "POST",
                                 queryParams = queryParams,
                                 headerParams = headerParams,
                                 body = body,
                                 ...)
      method = "POST"
      if (httr::status_code(resp) >= 200 && httr::status_code(resp) <= 299) {
       
        if(method == "GET"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          data <- json$result
          returnedOjects = list()
          for(i in 1:nrow(data)){
            row <- data[i,]
            returnObject <- DataCSVValidationDTO$new()
            returnObject$fromJSONObject(row)
            returnedOjects = c(returnedOjects,returnObject)
          }
          return(Response$new(json$metadata,returnedOjects, resp, TRUE))
        }
        if(method == "POST" || method == "PUT"){
          json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
          return(Response$new(json$metadata, json$metadata$datafiles, resp, TRUE))
        }
      } else if (httr::status_code(resp) >= 400 && httr::status_code(resp) <= 499) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      } else if (httr::status_code(resp) >= 500 && httr::status_code(resp) <= 599) {
        json <- jsonlite::fromJSON(httr::content(resp, "text", encoding = "UTF-8"))
        return(Response$new(json$metadata, json, resp, FALSE))
      }

    }
  )
)