Rcpp_SlalomModel: The "Slalom Model" (Rcpp_SlalomModel) class

Description Details Methods Slots

Description

S4 class and the main class used by slalom to hold model data and results. SingleCellExperiment extends the Bioconductor SummarizedExperiment class.

Details

This class is initialized from a matrix of expression values and a collection of genesets in a GeneSetCollection object from the GSEABase package.

Methods that operate on SingleCellExperiment objects constitute the basic scater workflow.

Methods

train()

void train() docstring : Train the SlalomModel

update()

void update() docstring : Update the SlalomModel

updateAlpha(...)

void updateAlpha(int) docstring : Update alpha

updateEpsilon()

void updateEpsilon() docstring : Update Epsilon

updatePi(...)

void updatePi(int) docstring : Update Pi

updateW(...)

void updateW(int) docstring : Update W

updateX(...)

void updateX(int) docstring : Update X

Slots

.xData:

Environment enabling access to the C++-level SlalomModel object.


PMBio/Rslalom documentation built on May 28, 2019, 2:23 p.m.