updateSlalom: Update a SlalomModel object
In PMBio/Rslalom: Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

Description Usage Arguments Details Value Author(s) Examples

Do one variational update of a SlalomModel to infer model parameters.

1	updateSlalom(object)

object

a Rcpp_SlalomModel object

Update the model with one iteration using variational Bayes methods to infer parameters.

an 'Rcpp_SlalomModel' object

Davis McCarthy

gmtfile <- system.file("extdata", "reactome_subset.gmt", package = "slalom")
genesets <- GSEABase::getGmt(gmtfile)
data("mesc")
model <- newSlalomModel(mesc, genesets, n_hidden = 5, min_genes = 10)
model <- initSlalom(model)
model <- updateSlalom(model)