allchains.EASE.enrich: allchains.EASE()

Description Usage Arguments Details Value Author(s) Examples

Description

Provide a rapid way to perform EASE.tests on <.allchains> objects created using the lipid.miner function.

Usage

1
allchains.EASE.enrich(X, Y, pval = 0.05, adjpval = 1)

Arguments

X

any <Query.allchains> object

Y

any <Universe.allchains> object

pval

is a regular pvalue to use as a cutoff for the enrichment

adjpval

is a BH adjusted pvalue to use as a cutoff for the enrichment

Details

The difference between the allchains.EASE and the allchains.EASE.enrich function is that the <.enrich> function allows to extract only the element that are enriched according to a Pvalue or a BH adjusted pvalue.

the universe file db.allchains is provided if you are lacking an universe file

Value

This function will return a data frame with the results of the tests

Author(s)

Geremy Clair

Examples

1

PNNL-Comp-Mass-Spec/Rodin documentation built on May 31, 2019, 5:18 p.m.