allchains.fisher: allchains.fisher()

In PNNL-Comp-Mass-Spec/Rodin: Lipid Mini-on

allchains.fisher()

Description

Performs fisher exact tests on an <.allchains> object

Usage

allchains.fisher(X, Y)

Arguments

X	any <Query.allchains> object
Y	any <Universe.allchains> object

Details

Peforms a Fisher's Exact enrichment test on a <Query.allchains> object compared to the same column of a <Universe.allchains> object.

The universe file db.intact is provided if you are lacking an universe file

Value

This function will return a data frame with the results of the tests

Author(s)

Geremy Clair

Examples

allchains.fisher(queryExample.allchains, universeExample.allchains)

PNNL-Comp-Mass-Spec/Rodin documentation built on Jan. 28, 2024, 2:12 a.m.