Files in PNNL-Comp-Mass-Spec/Rodin
Lipid Mini-on
.DS_Store
.Rbuildignore
.gitignore
.zenodo.json
DESCRIPTION
Example script/Example_of_use_ranking_mode.R
Example script/Example_of_use_target_list_mode.R
LICENSE
NAMESPACE
NEWS
R/01_clean_lipid_list.R
R/02_lipid_miner.R
R/03_subset_lipidclass.R
R/04_QueryWithinUniverse.R
R/05_bionom_test.R
R/06_binom_enrichment_functions.R
R/07_Fisher_test.R
R/08_Fisher_enrichment_functions.R
R/09_EASE_test.R
R/10_EASE_enrichment_functions.R
R/11_hyper_test.R
R/12_hyper_enrichment_functions.R
R/13_KS_test.R
R/14_KS_enrichment_function.R
R/15_total_carbon_and_DB_by_class.R
R/16_subclass_by_mainclass.R
R/17_subset_allchains.R
R/18_plots.R
R/19_Network_maker.R
R/20_dataset_documentation.R
R/21_run_the_tests.R
R/empPvals.R
R/hedenfalk.R
R/hist_qvalue.R
R/lfdr.R
R/multiplot.R
R/pi0est.R
R/plot_qvalue.R
R/qvalue.R
R/summary_qvalue.R
R/write_qvalue.R
README.md
Rodin.Rproj
data/QueryExample.rda
data/RTexample.allchains.rda
data/RTexample.chain.rda
data/RTexample.intact.rda
data/RankingTableExample.rda
data/UniverseExample.rda
data/cat.colors.rda
data/cleaned.RTexample.rda
data/cleaned.queryExample.rda
data/cleaned.universeExample.rda
data/datalist
data/exampleEnrichmentTable.rda
data/hedenfalk.RData
data/main.colors.rda
data/queryExample.allchains.rda
data/queryExample.chain.rda
data/queryExample.intact.rda
data/sub.colors.rda
data/universeExample.allchains.rda
data/universeExample.chain.rda
data/universeExample.intact.rda
man/QueryExample.Rd
man/QueryWithinUniverse.Rd
man/UniverseExample.Rd
man/allchains.EASE.Rd
man/allchains.EASE.enrich.Rd
man/allchains.barplot.Rd
man/allchains.binom.Rd
man/allchains.binom.enrich.Rd
man/allchains.cat.Rd
man/allchains.fisher.Rd
man/allchains.fisher.enrich.Rd
man/allchains.hyper.Rd
man/allchains.hyper.enrich.Rd
man/allchains.main.Rd
man/allchains.sub.Rd
man/cat.colors.Rd
man/chain.EASE.Rd
man/chain.EASE.enrich.Rd
man/chain.binom.Rd
man/chain.binom.enrich.Rd
man/chain.fisher.Rd
man/chain.fisher.enrich.Rd
man/chain.hyper.Rd
man/chain.hyper.enrich.Rd
man/chain.length.pie.Rd
man/chain.length.stack.Rd
man/chain.unsat.pie.Rd
man/chain.unsat.stack.Rd
man/clean.lipid.list.Rd
man/cleaned.db.Rd
man/cleaned.queryExample.Rd
man/cleaned.universeExample.Rd
man/db.Rd
man/db.allchains.Rd
man/db.chain.Rd
man/db.intact.Rd
man/exampleEnrichmentTable.Rd
man/intact.EASE.Rd
man/intact.EASE.enrich.Rd
man/intact.binom.Rd
man/intact.binom.enrich.Rd
man/intact.cat.pie.Rd
man/intact.cat.stack.Rd
man/intact.fisher.Rd
man/intact.fisher.enrich.Rd
man/intact.hyper.Rd
man/intact.hyper.enrich.Rd
man/intact.main.pie.Rd
man/intact.main.stack.Rd
man/intact.sub.pie.Rd
man/intact.sub.stack.Rd
man/lipid.miner.Rd
man/lipid_edge_maker.Rd
man/lipid_network_maker.Rd
man/lipid_visnetwork_plot.Rd
man/main.colors.Rd
man/queryExample.allchains.Rd
man/queryExample.chain.Rd
man/queryExample.intact.Rd
man/run_the_tests.Rd
man/sub.colors.Rd
man/subclass.mainclass.Rd
man/subsetcat.Rd
man/subsetmainclass.Rd
man/subsetsubclass.Rd
man/total.DB.cat.Rd
man/total.DB.main.Rd
man/total.DB.sub.Rd
man/total.carbon.cat.Rd
man/total.carbon.main.Rd
man/total.carbon.sub.Rd
man/universeExample.allchains.Rd
man/universeExample.chain.Rd
man/universeExample.intact.Rd
