lipid_network_maker: lipid_network_maker()

In PNNL-Comp-Mass-Spec/Rodin: Lipid Mini-on

lipid_network_maker()

Description

Enable the construction of enrichment networks

Usage

lipid_network_maker(X, Y, pval = 1, adjpval = 1, name = "network")

Arguments

X	either a edge data.frame created with the function edge_maker() or Any lipid character object, preferably cleaned using the clean.lipid.list() function
Y	any enrichment table created with Lipid Mini-On
pval	unadjusted pvalue cutoff
adjpval	BH adjusted pvalue cutoff
name	This will be the name of the output of the function ("network" by default")

Details

Create multiple enrichment network objects based on a query object and a Lipid-Mini-On enrichment analysis table result

Value

This function will return 3 object "name".edge (list of edges), "name".nodes_attributes(list of nodes, type of node, color), "name".edge_attribute (list of edges, colors)

Author(s)

Geremy Clair

Examples

lipid_network_maker(cleaned.queryExample,exampleEnrichmentTable,pval=0.05)

PNNL-Comp-Mass-Spec/Rodin documentation built on Jan. 28, 2024, 2:12 a.m.