API for Pasquali-lab/UMI4Cats
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
| Global functions | |
|---|---|
| %>% | Man page |
| .UMI4C | Man page |
| .getCache | Man page Source code |
| .getSummaryBam | Man page Source code |
| .makeFixedWindow | Source code |
| .makeSlidingWindow | Source code |
| .singleAlignmentUMI4C | Man page Source code |
| .singleCounterUMI4C | Man page Source code |
| .singlePrepUMI4C | Man page Source code |
| .singleSplitUMI4C | Man page Source code |
| .smoothMonotone | Man page Source code |
| .unlistExons | Source code |
| UMI4C | Man page Source code |
| UMI4C-class | Man page |
| UMI4C-methods | Man page |
| UMI4C2dds | Man page Source code |
| UMI4Cats | Man page |
| addGrouping | Man page Source code |
| addStepping | Man page |
| alignmentUMI4C | Man page Source code |
| bait | Man page |
| bait,UMI4C-method | Man page |
| calculateAdaptativeTrend | Man page Source code |
| calculateDomainogram | Man page Source code |
| callInteractions | Man page Source code |
| combineUMI4C | Man page Source code |
| contactsUMI4C | Man page Source code |
| counterUMI4C | Man page Source code |
| createGeneAnnotation | Man page Source code |
| createStatsTable | Man page Source code |
| darken | Man page |
| dds2UMI4C | Man page Source code |
| demultiplexFastq | Man page Source code |
| dgram | Man page |
| dgram,UMI4C-method | Man page |
| dgram<- | Man page |
| dgram<-,UMI4C-method | Man page |
| differentialNbinomWaldTestUMI4C | Man page Source code |
| digestGenome | Man page Source code |
| downloadUMI4CexampleData | Man page Source code |
| ex_ciita_umi4c | Man page |
| fisherUMI4C | Man page Source code |
| formatPlotsUMI4C | Man page Source code |
| geoMeanCoordinates | Man page Source code |
| getColors | Man page |
| getFactors | Man page |
| getNormalizationMatrix | Man page Source code |
| getSignInteractions | Man page Source code |
| getViewpointCoordinates | Man page Source code |
| groupSamplesUMI4C | Man page Source code |
| groupsUMI4C | Man page |
| groupsUMI4C,UMI4C-method | Man page |
| groupsUMI4C<- | Man page |
| groupsUMI4C<-,UMI4C-method | Man page |
| labels | Source code Source code |
| makeUMI4C | Man page Source code |
| makeWindowFragments | Man page Source code |
| nbinomWaldTestUMI4C | Man page Source code |
| plotDifferential | Man page Source code |
| plotDomainogram | Man page Source code |
| plotGenes | Man page |
| plotInteractions | Man page Source code |
| plotInteractionsUMI4C | Man page Source code |
| plotTrend | Man page |
| plotUMI4C | Man page Source code |
| prepUMI4C | Man page Source code |
| resultsUMI4C | Man page |
| resultsUMI4C,UMI4C-method | Man page |
| smoothMonotoneUMI4C | Man page Source code |
| splitUMI4C | Man page Source code |
| statsUMI4C | Man page Source code |
| theme | Man page |
| themeXYblank | Man page |
| themeXblank | Man page |
| themeYblank | Man page |
| trend | Man page |
| trend,UMI4C-method | Man page |
| vstUMI4C | Man page Source code |
| waldUMI4C | Man page Source code |
| zscoreUMI4C | Man page Source code |
