Files in PaulRegular/MSP
Multispecies production model incorporating covariance
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/fit.R
R/plot.R
R/stats.R
R/vis.R
R/zzz.R
analysis/NL_case_study/001_helpers.R
analysis/NL_case_study/002_analysis.R
analysis/NL_case_study/003_compile_scores.R
analysis/NL_case_study/004_plot_scores.R
analysis/NL_case_study/005_export_dashboards.R
analysis/NL_case_study/006_compile_trends.R
analysis/NL_case_study/007_plot_pop_trends.R
analysis/NL_case_study/008_plot_survey_trends.R
analysis/NL_case_study/009_plot_correlations.R
analysis/NL_case_study/K_shift/K_shift_analysis.R
analysis/NL_case_study/early_explorations/multispecies_surplus_production_explorations.Rmd
analysis/NL_case_study/early_explorations/multispic_estimates.csv
analysis/NL_case_study/exports/archive/2022-09-29/tables/multispic_process_error.csv
analysis/NL_case_study/exports/tables/multispic_process_error.csv
analysis/NL_case_study/stock_assessment_estimates/stock_assessment_estimates.csv
analysis/NL_case_study/tests/K_covariate_tests.R
analysis/NL_case_study/tests/K_group_test.R
analysis/NL_case_study/tests/survey_group_tests.R
analysis/NL_case_study/tests/vis_multispic_tests.R
analysis/paper/01_introduction.Rmd
analysis/paper/02_methods.Rmd
analysis/paper/03_results.Rmd
analysis/paper/04_discussion.Rmd
analysis/paper/05_acknowledgements.Rmd
analysis/paper/06_references.Rmd
analysis/paper/07_figures.Rmd
analysis/paper/_book/drafting/ms mjm.docx
analysis/paper/_book/drafting/ms mjm_pp.docx
analysis/paper/_book/drafting/ms_RR.docx
analysis/paper/_book/drafting/ms_v2+mjm.docx
analysis/paper/_book/drafting/ms_v2.docx
analysis/paper/_book/drafting/ms_v2_RR.docx
analysis/paper/_book/drafting/ms_v2_RR_mjm.docx
analysis/paper/_book/drafting/ms_v2_RR_mjm_PMR.docx
analysis/paper/_book/drafting/ms_v3.docx
analysis/paper/_book/drafting/ms_v3_RR.docx
analysis/paper/_book/drafting/ms_v3_RR_mjm.docx
analysis/paper/_book/drafting/ms_v3_mjm.docx
analysis/paper/_book/drafting/ms_v4.docx
analysis/paper/_book/ms.docx
analysis/paper/_book/reference-keys.txt
analysis/paper/_bookdown.yml
analysis/paper/bib/refs.bib
analysis/paper/csl/fish-and-fisheries.csl
analysis/paper/csl/fisheries-research.csl
analysis/paper/csl/ices.csl
analysis/paper/csl/pnas.csl
analysis/paper/csl/sr.csl
analysis/paper/figures/epu_map.png
analysis/paper/index.Rmd
analysis/paper/style/template.docx
data-raw/covariates.csv
data-raw/covariates/capelin/capelin_biomass_estimates.R
data-raw/covariates/capelin/capelin_biomass_estimates.csv
data-raw/covariates/capelin/capelin_biomass_index.csv
data-raw/covariates/climate/NL_climate_index.csv
data-raw/covariates/climate/NL_climate_index_all_fields.csv
data-raw/covariates/climate/NL_climate_index_all_fields_natural_signs.csv
data-raw/covariates/climate/README_FRDR.txt
data-raw/covariates/climate/cei.csv
data-raw/covariates/climate/core_cil.csv
data-raw/covariates/climate/monthly_NAO.txt
data-raw/covariates/climate/tice.csv
data-raw/covariates/compile_covariates.R
data-raw/index.csv
data-raw/index/exports/witch_3NO.csv
data-raw/index/exports/yellowtail_3LNO.csv
data-raw/index/index_helpers.R
data-raw/index/make_index.R
data-raw/index/stratum_areas.pc4
data-raw/landings.csv
data-raw/landings/STATLANT21A_Extraction.csv
data-raw/landings/make_landings.R
data-raw/process_data.R
data/index.RData
data/landings.RData
inst/rmd/vis_multispic.Rmd
man/add_fit.Rd
man/logit.Rd
man/multispic.Rd
man/par_option.Rd
man/plot_post.Rd
man/run_loo.Rd
man/run_retro.Rd
man/vis_multispic.Rd
multispic.Rproj
src/debug_tmb.R
src/multispic.cpp
