Files in PeteHaitch/cometh

Analyse, manage and visualise co-methylation data.

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/AllClasses.R R/AllGenerics.R R/AllUtilities.R R/RcppExports.R R/autoCorVP.R R/betaAutoCor.R R/betaCor.R R/betaCor_NIL0.R R/betaCor_NILGeneral.R R/cometh.R R/findOverlaps-methods.R R/fread.comethylation.R R/generalNILVP.R R/methods-BetaCor-class.R R/methods-CoMeth-class.R R/methods-MTuples-class.R R/methods-MethylationLociSet-class.R R/read.mbias.R README.md

cometh-package.Rd

cometh.Rproj

man/CoMeth-class.Rd man/MTuples-class.Rd man/MethylationLociSet.Rd man/betaCor.Rd man/cometh.Rd man/fread.comethylation.Rd man/getCoverage-CoMeth-method.Rd man/getPos.Rd man/makeMLS.Rd man/read.comethylation.Rd man/read.mbias.Rd

src/RcppExports.cpp

src/allRowsSortedCpp.cpp

src/candidateDuplicateMTuplesCpp.cpp

src/compareMTuplesCpp.cpp

src/makeAutoCorVP.cpp

src/rowDiffsCpp.cpp

src/rowSumsHashInternalCpp.cpp

tests/test-all.R tests/testthat/helper_make_test_data.R tests/testthat/test-AllUtilities.R tests/testthat/test-CoMeth_class.R tests/testthat/test-MTuples_class.R tests/testthat/test-MethylationLociSet.R tests/testthat/test-Rcpp_functions.R tests/testthat/test-betaCor.R

vignettes/.gitignore

vignettes/comparison-type_methods_for_MTuples.Rmd vignettes/creating_MTuples_and_CoMeth_classes.Rmd vignettes/faster_duplicated_method.Rmd vignettes/parsing_m-bias_output.Rmd vignettes/unexplained_subsetting_behaviour_of_classes_based_on_SummarizedExperiment.Rmd

PeteHaitch/cometh documentation built on May 8, 2019, 1:32 a.m.