fread.comethylation: A faster version of 'read.comethylation'
In PeteHaitch/cometh: Analyse, manage and visualise co-methylation data.
Description
Uses data.table::fread for faster reading of comethylation
.tsv output files. See https://github.com/PeteHaitch/cometh/issues/18
for benchmarking and a discussion of pros and cons of this approach.
Currently uses R.utils::gunzip to handle gzip files and gunzip-s these to
a temporary directory, which is created by tempdir().
Usage
1
2
fread.comethylation(files, sample_names, methylation_types, seqinfo,
verbose = FALSE)
PeteHaitch/cometh documentation built on May 8, 2019, 1:32 a.m.
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Description
Uses data.table::fread for faster reading of comethylation
.tsv output files. See https://github.com/PeteHaitch/cometh/issues/18
for benchmarking and a discussion of pros and cons of this approach.
Currently uses R.utils::gunzip to handle gzip files and gunzip-s these to
a temporary directory, which is created by tempdir().
Usage
1 2 | fread.comethylation(files, sample_names, methylation_types, seqinfo,
verbose = FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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