CoMeth-class: An S4 class to store co-methylation patterns at m-tuples of...

In PeteHaitch/cometh: Analyse, manage and visualise co-methylation data.

Description

An S4 class to store co-methylation patterns at m-tuples of genomic positions.

Details

The CoMeth class is based on the SummarizedExperiment class. The main difference is that rather than using a GRanges object as the rowData, a CoMeth object uses an MTuples object.

The assays of a CoMeth object are the counts of how many times each co-methylation pattern is observed for that m-tuple in each sample. For example, the possible co-methylation patterns of 2-tuples are 'MM', 'MU', 'UM' and 'UU' and thus there are four assays of the same names.

Constructor

TODO: Insert help for constructor method.

Coercion

TODO: Insert help for any coerction methods.

Accessors

TODO: Insert help for any accessor methods.

Splitting and combining

TODO: Insert help for any splitting and combining methods.

Subsetting

TODO: Describe any subsetting methods.

Filtering

TODO: Describe any filtering methods.

Methods based on findOverlaps

TODO Insert help for any findOverlaps-based methods.

Other methods

TODO: Describe any other methods.

PeteHaitch/cometh documentation built on May 8, 2019, 1:32 a.m.